Uses of Class
org.evoludo.simulator.EvoLudo

Packages that use EvoLudo

Package	Description
org.evoludo.graphics	The GWT graphics for rendering and visualizing evolutionary models.
org.evoludo.simulator	The toolkit to explore interactive evolutionary models.
org.evoludo.simulator.exec	Custom modules for running simulations on the command line.
org.evoludo.simulator.geometries	Geometries for population interaction and competition graphs used by the simulator.
org.evoludo.simulator.models	The models that generate evolutionary trajectories based on the specifications of each module.
org.evoludo.simulator.modules	The modules to implement various evolutionary models.

Uses of EvoLudo in org.evoludo.graphics

Constructors in org.evoludo.graphics with parameters of type EvoLudo

Modifier	Constructor	Description
	Network2DGWT(EvoLudo engine, AbstractGeometry geometry)	Create a new network in 2D for the given engine and geometry with a layouting process optimzed for GWT.
	Network3DGWT(EvoLudo engine, AbstractGeometry geometry)	Create a new network in 3D for the given engine and geometry with a layouting process optimzed for GWT.

Uses of EvoLudo in org.evoludo.simulator

Subclasses of EvoLudo in org.evoludo.simulator

Modifier and Type	Class	Description
class	EvoLudoGWT	GWT specific implementation of EvoLudo controller.

Fields in org.evoludo.simulator declared as EvoLudo

Modifier and Type	Field	Description
private final EvoLudo	CLOController.engine	Owning EvoLudo engine coordinating models and modules.
private final EvoLudo	LifecycleController.engine	Owning engine used to query modules and dispatch events.
protected EvoLudo	Network.engine	The pacemaker of all models.
private final EvoLudo	RunController.engine	Engine whose execution is coordinated by this controller.
private final EvoLudo	StateEncoder.engine	Owning runtime whose state will be encoded.

Constructors in org.evoludo.simulator with parameters of type EvoLudo

Modifier	Constructor	Description
	CLOController(EvoLudo evo)	Create a controller bound to the supplied engine.
	LifecycleController(EvoLudo engine)	Create a controller bound to the supplied engine.
protected	Network(EvoLudo engine, AbstractGeometry geometry)	Create a new network for the given engine and geometry.
protected	Network2D(EvoLudo engine, AbstractGeometry geometry)	Create a new network in 2D for the given engine and geometry.
protected	Network3D(EvoLudo engine, AbstractGeometry geometry)	Create a new network in 3D for the given engine and geometry.
	RunController(EvoLudo engine)	Constructs a new RunController for the specified EvoLudo engine.
	StateEncoder(EvoLudo engine)	Create a state encoder for the supplied engine.

Uses of EvoLudo in org.evoludo.simulator.exec

Constructors in org.evoludo.simulator.exec with parameters of type EvoLudo

Modifier	Constructor	Description
	scanCSD(EvoLudo engine)	Create a new scanCSD simulation.
	simCDL(EvoLudo engine)	Create a new simulation to investigate the role of volunteering in public goods games.
protected	simCDLIBS(EvoLudo engine, CDL module)	Create a new simulation.
	simCDLP(EvoLudo engine)	Create a new simulation to investigate the role of punishment in voluntary public goods games.
	simCDLPQ(EvoLudo engine)	Create a new simulation to investigate the role of pool- versus peer-punishment in voluntary public goods games.
	simTBT(EvoLudo engine)	Create a new simulation to investigate the two player, two trait model.
	simTraits(EvoLudo engine)	Create a new simulation to compare the performance of individual based simulations versus stochastic differential equations.

Uses of EvoLudo in org.evoludo.simulator.geometries

Fields in org.evoludo.simulator.geometries declared as EvoLudo

Modifier and Type	Field	Description
(package private) final EvoLudo	AbstractGeometry.engine	The pacemaker of all models.

Methods in org.evoludo.simulator.geometries with parameters of type EvoLudo

Modifier and Type	Method	Description
static AbstractGeometry	AbstractGeometry.create(EvoLudo engine, String cli)	Instantiate the requested geometry based on cli.
static AbstractGeometry	AbstractGeometry.create(EvoLudo engine, GeometryType type)	Factory method for creating geometry instances by type.

Constructors in org.evoludo.simulator.geometries with parameters of type EvoLudo

Modifier	Constructor	Description
protected	AbstractGeometry(EvoLudo engine)	Create a new geometry scaffold linked to the given pacemaker.
protected	AbstractLattice(EvoLudo engine)	Create a lattice geometry scaffold for the given engine.
protected	AbstractNetwork(EvoLudo engine)	Create a network-backed geometry for the provided engine.
	BarabasiAlbertGeometry(EvoLudo engine)	Create a Barabási-Albert geometry tied to the given engine.
	CompleteGeometry(EvoLudo engine)	Create a complete-graph geometry for the given engine.
	CubicGeometry(EvoLudo engine)	Create a cubic-lattice geometry tied to the given engine.
	DesarguesGeometry(EvoLudo engine)	Create a Desargues geometry tied to the given engine.
	DodekahedronGeometry(EvoLudo engine)	Create a dodecahedral geometry tied to the given engine.
	DynamicGeometry(EvoLudo engine)	Create a dynamic geometry placeholder controlled by the provided engine.
	FranklinGeometry(EvoLudo engine)	Create a Franklin geometry tied to the given engine.
	FruchtGeometry(EvoLudo engine)	Create a Frucht-graph geometry coordinated by the supplied engine.
	HeawoodGeometry(EvoLudo engine)	Create a Heawood geometry tied to the given engine.
	HexagonalGeometry(EvoLudo engine)	Create a hexagonal (honeycomb) geometry tied to the given engine.
	HierarchicalGeometry(EvoLudo engine)	Create a hierarchical geometry tied to the given engine.
	IcosahedronGeometry(EvoLudo engine)	Create an icosahedral geometry tied to the given engine.
	KlemmEguiluzGeometry(EvoLudo engine)	Create a Klemm-Eguíluz small-world geometry managed by the supplied engine.
	LinearGeometry(EvoLudo engine)	Create a linear (1D lattice) geometry attached to the given engine.
	MooreGeometry(EvoLudo engine)	Create a Moore square lattice geometry tied to the given engine.
	RandomDirectedGeometry(EvoLudo engine)	Create a directed random-graph geometry controlled by the provided engine.
	RandomGeometry(EvoLudo engine)	Create an undirected random-graph geometry coordinated by the provided engine.
	RandomRegularGeometry(EvoLudo engine)	Create a random regular geometry tied to the given engine.
	ScalefreeGeometry(EvoLudo engine)	Create a scale-free geometry tied to the given engine.
	SecondNeighbourGeometry(EvoLudo engine)	Create a second-neighbour square lattice geometry tied to the given engine.
	SquareGeometry(EvoLudo engine)	Create a square lattice geometry tied to the given engine.
	StarGeometry(EvoLudo engine)	Create a star geometry tied to the given engine.
	StrongAmplifierGeometry(EvoLudo engine)	Create a strong amplifier geometry tied to the given engine.
	StrongSuppressorGeometry(EvoLudo engine)	Create a strong suppressor geometry tied to the given engine.
	SuperstarGeometry(EvoLudo engine)	Create a super-star geometry tied to the given engine.
	TietzeGeometry(EvoLudo engine)	Create a Tietze geometry tied to the given engine.
	TriangularGeometry(EvoLudo engine)	Create a triangular (hexagonal tiling) geometry linked to the given engine.
	VonNeumannGeometry(EvoLudo engine)	Create a von Neumann square lattice geometry tied to the given engine.
	WellmixedGeometry(EvoLudo engine)	Create a well-mixed (mean-field) geometry tied to the supplied engine.
	WheelGeometry(EvoLudo engine)	Create a wheel (cycle with hub) geometry tied to the given engine.

Uses of EvoLudo in org.evoludo.simulator.models

Fields in org.evoludo.simulator.models declared as EvoLudo

Modifier and Type	Field	Description
protected EvoLudo	IBSPopulation.engine	The pacemaker of all models.
protected EvoLudo	Model.engine	The pacemaker of all models.
protected EvoLudo	PDESupervisor.engine	The pacemaker of all models.

Constructors in org.evoludo.simulator.models with parameters of type EvoLudo

Modifier	Constructor	Description
	Advection(EvoLudo engine)	Constructs a new model for the numerical integration of the system of partial differential equations representing the dynamics specified by the Module module using the EvoLudo pacemaker engine to control the numerical evaluations.
protected	IBS(EvoLudo engine)	Creates a population of individuals for IBS simulations.
	IBSC(EvoLudo engine)	Creates a population of individuals for IBS simulations with continuous traits.
	IBSCPopulation(EvoLudo engine, Continuous module)	Creates a population of individuals with a single continuous trait for IBS simulations.
	IBSD(EvoLudo engine)	Creates a population of individuals for IBS simulations with discrete traits.
	IBSDPopulation(EvoLudo engine, Discrete module)	Creates a population of individuals with discrete traits for IBS simulations.
	IBSMCPopulation(EvoLudo engine, Continuous module)	Creates a population of individuals with multiple continuous traits for IBS simulations.
protected	IBSPopulation(EvoLudo engine, M module)	Creates a population of individuals for IBS simulations.
protected	Model(EvoLudo engine)	Creates a model.
	ODE(EvoLudo engine)	Constructs a new model for the numerical integration of the system of ordinary differential equations representing the dynamics specified by the Module module using the EvoLudo pacemaker engine to control the numerical evaluations.
	PDE(EvoLudo engine)	Constructs a new model for the numerical integration of the system of partial differential equations representing the dynamics specified by the Module module using the EvoLudo pacemaker engine to control the numerical evaluations.
	PDESupervisor(EvoLudo engine, PDE charge)	Creates a new supervisor to manage the PDE calculations of model charge.
	PDESupervisorGWT(EvoLudo engine, PDE charge)	Creates a new supervisor to manage the PDE calculations of model charge with scheduling in GWT.
	RungeKutta(EvoLudo engine)	Constructs a new model for the numerical integration of the system of ordinary differential equations representing the dynamics specified by the Module module using the EvoLudo pacemaker engine to control the numerical evaluations.
	SDE(EvoLudo engine)	Constructs a new model for the numerical integration of the system of stochastic differential equations representing the dynamics specified by the Module module using the EvoLudo pacemaker engine to control the numerical evaluations.

Uses of EvoLudo in org.evoludo.simulator.modules

Fields in org.evoludo.simulator.modules declared as EvoLudo

Modifier and Type	Field	Description
protected EvoLudo	Module.engine	The pacemaker of all models.

Constructors in org.evoludo.simulator.modules with parameters of type EvoLudo

Modifier	Constructor	Description
	ATBT(EvoLudo engine)	Create a new instance of the module for asymmetric 2×2 games.
	CDL(EvoLudo engine)	Create a new instance of the module for voluntary public goods games.
	CDLP(EvoLudo engine)	Create a new instance of the module for voluntary public goods games with peer punishment.
	CDLPQ(EvoLudo engine)	Create a new instance of the module for voluntary public goods games with peer and pool punishment.
	Centipede(EvoLudo engine)	Constructs a new instance for the Centipede module.
	CLabour(EvoLudo engine)	Constructs a new EvoLudo module for the evolution of two behavioural traits.
protected	Continuous(EvoLudo engine)	Create new module with continuous traits.
protected	Continuous(EvoLudo engine, Continuous partner)	Create a new module with continuous traits for pacemaker engine and interactions with module partner.
	CSD(EvoLudo engine)	Create a new instance of the module for continuous games.
	DemesTBT(EvoLudo engine)	Create a new instance of the DemesTBT module.
protected	Discrete(EvoLudo engine)	Create new module with a discrete set of traits.
private	Discrete(EvoLudo engine, Discrete partner)	Create a new module with a discrete set of traits with pacemaker engine and interactions with module partner.
	EcoPGG(EvoLudo engine)	Create a new instance of the module for ecological public goods games.
protected	IBSPop(EvoLudo engine, CDL module)	Create a new instance of the IBS model for voluntary (non-linear) public goods games.
protected	IBSPop(EvoLudo engine, DemesTBT module)	Create a new instance of the IBSPop class.
protected	IBSPop(EvoLudo engine, Discrete module)	Create a new custom implementation for IBS simulations.
protected	IBSPop(EvoLudo engine, NetGames module)	Create a new instance of the IBS model for cooperative actions on dynamical networks.
protected	IBSPop(EvoLudo engine, RSP module)	Create a new instance of the IBS model for 3×3 games.
protected	IBSPop(EvoLudo engine, TBT module)	Create a new instance of the IBS model for 2×2 games.
	LV(EvoLudo engine)	Create a new instance of the Lotka-Volterra module.
protected	Module(EvoLudo engine, T partner)	Instantiate a new Module with engine and partner.
	Moran(EvoLudo engine)	Create a new instance of the module for the Moran process.
	NetGames(EvoLudo engine)	Create a new instance of the module for cooperation in dynamical networks, where the network structure encodes the individuals behaviour.
	RSP(EvoLudo engine)	Create a new instance of the module for rock-scissors-paper games.
	SIR(EvoLudo engine)	Create a new SIR module with the given pacemaker.
	TBT(EvoLudo engine)	Create a new instance of the module for 2×2 games.