Class simCDLPQ
- All Implemented Interfaces:
Runnable,ChangeListener,IBS.HasIBS,IBS.HasIBS.DGroups,IBS.HasIBS.DPairs,MilestoneListener,Model.HasDE,Model.HasDE.DGroups,Model.HasDE.EM,Model.HasDE.ODE,Model.HasDE.PDE,Model.HasDE.PDEADV,Model.HasDE.PDERD,Model.HasDE.RK5,Model.HasDE.SDE,Features,Features.Groups,Features.Pairs,Features.Payoffs,HasHistogram,HasHistogram.Degree,HasHistogram.Fitness,HasHistogram.StatisticsStationary,HasMean,HasMean.Fitness,HasMean.Traits,HasPop2D,HasPop2D.Fitness,HasPop2D.Traits,HasPop3D,HasPop3D.Fitness,HasPop3D.Traits,HasS3,CLOProvider
- Author:
- Christoph Hauert
- See Also:
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Nested Class Summary
Nested classes/interfaces inherited from class CDL
CDL.IBSPopNested classes/interfaces inherited from interface ChangeListener
ChangeListener.PendingActionNested classes/interfaces inherited from interface Features
Features.Groups, Features.Multispecies, Features.Pairs, Features.Payoffs, Features.StaticNested classes/interfaces inherited from interface HasHistogram
HasHistogram.Degree, HasHistogram.Fitness, HasHistogram.StatisticsProbability, HasHistogram.StatisticsStationary, HasHistogram.StatisticsTime, HasHistogram.StrategyNested classes/interfaces inherited from interface HasMean
HasMean.Fitness, HasMean.TraitsNested classes/interfaces inherited from interface HasPop2D
HasPop2D.Fitness, HasPop2D.TraitsNested classes/interfaces inherited from interface HasPop3D
HasPop3D.Fitness, HasPop3D.TraitsNested classes/interfaces inherited from interface IBS.HasIBS
IBS.HasIBS.CGroups, IBS.HasIBS.CPairs, IBS.HasIBS.DGroups, IBS.HasIBS.DPairs, IBS.HasIBS.MCGroups, IBS.HasIBS.MCPairsNested classes/interfaces inherited from interface Model.HasDE
Model.HasDE.DGroups, Model.HasDE.DPairs, Model.HasDE.DualDynamics, Model.HasDE.EM, Model.HasDE.ODE, Model.HasDE.PDE, Model.HasDE.PDEADV, Model.HasDE.PDERD, Model.HasDE.RK5, Model.HasDE.SDE -
Field Summary
FieldsModifier and TypeFieldDescriptionfinal CLOptionCommand line option to set the interval for taking snapshots.(package private) double[]Temporary variables for fixation probabilities and absorption times.(package private) PrintStreamThe output stream.(package private) doubleTime of previous sample.(package private) longThe interval for saving snapshots.(package private) double[]Temporary variables for fixation probabilities and absorption times.(package private) double[]Temporary variables for fixation probabilities and absorption times.Fields inherited from class CDLPQ
cloCostPoolPunish, cloPoolPunish, SANCTIONINGFields inherited from class CDLP
cloCostPunish, cloLeniencyCooperators, cloLeniencyLoners, cloPunishment, PUNISHFields inherited from class CDL
cloCost, cloInterest, cloLoneCooperator, cloLoneDefector, cloLoner, cloOthers, cloSolo, COOPERATE, costCoop, DEFECT, doSolo, isLinearPGG, LONER, othersOnly, payLoneCoop, payLoneDefect, payLoner, r1, rNFields inherited from class Discrete
cloMonoStop, monoStop, mutationFields inherited from class Module
cloDeathRate, cloGeometry, cloNGroup, cloNPopulation, cloPhase2DAxes, cloTraitColors, cloTraitDisable, cloTraitNames, competition, deathRate, defaultColor, engine, interaction, logger, map2fitness, markers, model, nActive, name, nGroup, nPopulation, nTraits, playerUpdate, structure, traitColor, trajectoryColor, VACANTFields inherited from interface HasS3
CORNER_LEFT, CORNER_RIGHT, CORNER_TOP, EDGE_BOTTOM, EDGE_LEFT, EDGE_RIGHT -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoidcollectCLO(CLOParser parser) All providers of command line options must implement this method to collect their options.static voidMain method to run the simulation.voidCalled whenever the state of the EvoLudo model changed.voidCalled after a running EvoLudo model stopped because the model converged (or reached an absorbing state).protected FileopenSnapshot(String ext) Open file for exporting the snapshot.protected voidReset statistics.voidrun()voidsaveSnapshot(int format) Save snapshot of current configuration.protected voidStart collecting statistics.protected voidupdateStatistics(double time) Update statistics.Methods inherited from class CDLPQ
avgScores, getAuthors, getMinPayoff, getMonoPayoff, getPoolPunishCost, getPoolPunishFine, getTitle, groupScores, load, mixedScores, pairScores, setPoolPunishCost, setPoolPunishFineMethods inherited from class CDLP
createIBSPop, getLeniencyCoop, getLeniencyLoner, getPunishCost, getPunishFine, setLeniencyCoop, setLeniencyLoner, setPunishCost, setPunishFineMethods inherited from class CDL
adjustCLO, check, getCostCoop, getDependent, getInterest, getMaxPayoff, getOthersOnly, getPayLoneCoop, getPayLoneDefect, getPayLoner, getSolo, interest, setCostCoop, setInterest, setInterest, setOthersOnly, setPayLoneCoop, setPayLoneDefect, setPayLoner, setSolo, unloadMethods inherited from class Discrete
add, getMaxMonoPayoff, getMinMonoPayoff, getMonoStop, getMutation, setMonoStopMethods inherited from class Module
createGeometry, createModel, getActiveTraits, getCompetitionGeometry, getDeathRate, getGeometry, getIBSPopulation, getID, getInteractionGeometry, getKey, getMap2Fitness, getMarkers, getMeanColors, getModelTypes, getNActive, getName, getNGroup, getNPopulation, getNRoles, getNSpecies, getNTraits, getOpponent, getPlayerUpdate, getSpecies, getSpecies, getTraitColor, getTraitColors, getTraitName, getTraitNames, getTrajectoryColor, getVacant, init, processColorMap, reset, setActiveTraits, setDeathRate, setGeometries, setIBSPopulation, setModel, setName, setNGroup, setNPopulation, setNTraits, setOpponent, setTraitColors, setTraitNames, setTrajectoryColorMethods inherited from class Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, waitMethods inherited from interface Features
isMultispecies, isStaticMethods inherited from interface Features.Groups
getNGroup, isPairwiseMethods inherited from interface Features.Payoffs
getMap2Fitness, getMaxMonoPayoff, getMinMonoPayoff, isNeutralMethods inherited from interface HasHistogram
getCustomLevels, getNTraits, getTraitColorsMethods inherited from interface IBS.HasIBS
createIBSMethods inherited from interface IBS.HasIBS.DGroups
mixedScoresMethods inherited from interface MilestoneListener
modelDidInit, modelDidReset, modelLoaded, modelRelaxed, modelRunning, modelSettings, modelUnloaded, moduleLoaded, moduleRestored, moduleUnloaded
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Field Details
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snapinterval
long snapintervalThe interval for saving snapshots. -
out
PrintStream outThe output stream. Defaults toSystem.out. -
mean
double[] meanTemporary variables for fixation probabilities and absorption times. -
var
double[] varTemporary variables for fixation probabilities and absorption times. -
state
double[] stateTemporary variables for fixation probabilities and absorption times. -
prevsample
double prevsampleTime of previous sample. -
cloSnapInterval
Command line option to set the interval for taking snapshots.
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Constructor Details
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simCDLPQ
Create a new simulation to investigate the role of pool- versus peer-punishment in voluntary public goods games.- Parameters:
engine- the pacemaker for running the model
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Method Details
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run
public void run()Description copied from class:ModuleDefault run-loop for modules. Opportunity to override in subclasses for running customized simulations. Currently only called from
EvoLudoJRE.simulation()if custom simulation class is specified injarfile. -
modelChanged
Description copied from interface:ChangeListenerCalled whenever the state of the EvoLudo model changed. Process potentially pending requests.Note: the model may process some pending actions directly and without notifying the listeners through
modelChanged(PendingAction)first. In particular, this applies to pending actions that fire their own notifications, such asRESETandINITthat in turn triggermodelReset()andmodelInit(), respectively.- Specified by:
modelChangedin interfaceChangeListener- Parameters:
action- pending action that needs to be processed.- See Also:
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modelStopped
public void modelStopped()Description copied from interface:MilestoneListenerCalled after a running EvoLudo model stopped because the model converged (or reached an absorbing state).- Specified by:
modelStoppedin interfaceMilestoneListener
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startStatistics
protected void startStatistics()Start collecting statistics. -
resetStatistics
protected void resetStatistics()Reset statistics. -
updateStatistics
protected void updateStatistics(double time) Update statistics.- Parameters:
time- the current time
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collectCLO
Description copied from interface:CLOProviderAll providers of command line options must implement this method to collect their options.Each command line option is (uniquely) identified by it's name (see
CLOption.getName()), which corresponds to the long version of the option. If an attempt is made to add an option with a name that already exists, theparserissues a warning and ignores the option. Thus, in general, implementing subclasses should first register their options and callsuper.collectCLO(CLOParser)at the end such that subclasses are able to override command line options specified in a parental class.Override this method in subclasses to add further command line options. Subclasses must make sure that they include a call to super.
- Specified by:
collectCLOin interfaceCLOProvider- Overrides:
collectCLOin classCDLPQ- Parameters:
parser- the reference to parser that manages command line options- See Also:
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saveSnapshot
public void saveSnapshot(int format) Save snapshot of current configuration.- Parameters:
format- the format of the snapshot- See Also:
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openSnapshot
Open file for exporting the snapshot.- Parameters:
ext- the file extension- Returns:
- the file for the snapshot
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main
Main method to run the simulation.- Parameters:
args- the array of command line arguments
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