Class WellmixedGeometry

Object

AbstractGeometry

WellmixedGeometry

public class WellmixedGeometry
extends AbstractGeometry

Geometry implementation for well-mixed (mean-field) populations.

Field Summary

Fields inherited from class AbstractGeometry

connectivity, EMPTY_LINKS, engine, features, in, isInterspecies, isRegular, isRewired, isSingle, isUndirected, isValid, kin, kout, logger, name, network2D, network3D, out, pAddwire, pRewire, size, specs, type

Constructor Summary

Constructors

Constructor	Description
WellmixedGeometry(EvoLudo engine)	Create a well-mixed (mean-field) geometry tied to the supplied engine.

Method Summary

Modifier and Type	Method	Description
void	init()	Generates a well-mixed graph, also termed mean-field network or unstructured population.

Methods inherited from class AbstractGeometry

addDirected, addEdgeAt, addLinkAt, addUndirected, alloc, check, checkSettings, clearLinksFrom, clearLinksTo, clone, create, create, decodeGeometry, deriveCompetitionGeometry, displaySingle, encodeGeometry, enforceSize, equals, getAddwire, getConnectivity, getEncodeKey, getFeatures, getLabel, getName, getNetwork2D, getNetwork3D, getRewire, getSize, getSpecs, getType, hashCode, isConsistent, isGraphConnected, isInterspecies, isLattice, isNeighborOf, isRegular, isRewired, isSingle, isType, isUndirected, isUnique, parse, parse, removeEdgeAt, removeLinkAt, rewire, rewireDirected, rewireEdgeAt, rewireLinkAt, rewireUndirected, setAddwire, setConnectivity, setInterspecies, setName, setNetwork2D, setNetwork3D, setRewire, setSingle, setSize, setType, swapEdges, usage, warn

Methods inherited from class Object

finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Details

WellmixedGeometry

public WellmixedGeometry(EvoLudo engine)

Create a well-mixed (mean-field) geometry tied to the supplied engine.

Parameters:

engine - EvoLudo pacemaker

Method Details

init

public void init()

Generates a well-mixed graph, also termed mean-field network or unstructured population. In the limit of large population sizes, the results of IBS simulations must converge to those of the corresponding stochastic and deterministic dynamical equations as produced by SDE and ODE models.

Specified by:

init in class AbstractGeometry